It does have to bypass unbound…but that is fine…becuase it is going directly to the cloudflare 1.1.1.1 authoritative DNS servers
Using this method, Installed cloudflared
added --port 5336 to this line in the service script
ExecStart=/usr/local/bin/cloudflared proxy-dns --port 5336
Nice thing is Pi-hole is caching the hits just like before…no longer need unbound since it’s full encrypted to cloudflare DNS servers
Changed the upstream port in Pi-hole server to 127.0.0.1#5336 and blamo
Getting good hits in my Pi-hole logs as well
Further reading if interested: